IL_6B4V_210

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAGUUGC*GCACUCUA

Length

15 nucleotides

Bulged bases

6B4V|1|EB|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|EB|U|1122
6B4V|1|EB|A|1123
6B4V|1|EB|G|1124
6B4V|1|EB|U|1125
6B4V|1|EB|U|1126
6B4V|1|EB|G|1127
6B4V|1|EB|C|1128
*
6B4V|1|EB|G|1144
6B4V|1|EB|C|1145
6B4V|1|EB|A|1146
6B4V|1|EB|C|1147
6B4V|1|EB|U|1148
6B4V|1|EB|C|1149
6B4V|1|EB|U|1150
6B4V|1|EB|A|1151

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain VC

30S ribosomal protein S9

Chain WC

30S ribosomal protein S10