IL_6B4V_252

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCACUGA*UCAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|FB|G|864
6B4V|1|FB|C|865
6B4V|1|FB|A|866
6B4V|1|FB|C|867
6B4V|1|FB|U|868
6B4V|1|FB|G|869
6B4V|1|FB|A|870
*
6B4V|1|FB|U|907
6B4V|1|FB|C|908
6B4V|1|FB|A|909
6B4V|1|FB|A|910
6B4V|1|FB|A|911
6B4V|1|FB|C|912

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L25

Chain GB

5S ribosomal RNA; 5S rRNA

Chain RB

50S ribosomal protein L16