IL_6B4V_256

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAG*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_256 not in the Motif Atlas

Homologous match to IL_7RQB_034

Geometric discrepancy: 0.076

The information below is about IL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

6B4V|1|FB|G|952
6B4V|1|FB|A|953
6B4V|1|FB|G|954
*
6B4V|1|FB|U|963
6B4V|1|FB|C|964
6B4V|1|FB|C|965

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain GB

5S ribosomal RNA; 5S rRNA

Chain RB

50S ribosomal protein L16