IL_6B4V_259

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_259 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.1038

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6B4V|1|FB|C|1004
6B4V|1|FB|C|1005
6B4V|1|FB|C|1006
6B4V|1|FB|C|1007
6B4V|1|FB|C|1008
6B4V|1|FB|A|1009
6B4V|1|FB|A|1010
6B4V|1|FB|G|1011
*
6B4V|1|FB|C|1150
6B4V|1|FB|G|1151

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain OB

50S ribosomal protein L13

Chain VB

50S ribosomal protein L20