IL_6B4V_272

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_272 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.242

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6B4V|1|FB|U|1357
6B4V|1|FB|G|1358
6B4V|1|FB|A|1359
6B4V|1|FB|A|1360
6B4V|1|FB|G|1361
*
6B4V|1|FB|C|1370
6B4V|1|FB|G|1371
6B4V|1|FB|U|1372
6B4V|1|FB|A|1373
6B4V|1|FB|G|1374

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L28

Chain IB

50S ribosomal protein L2

Chain IC

50S ribosomal protein L34