IL_6B4V_287

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6B4V|1|FB|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_287 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1496

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6B4V|1|FB|C|1686
6B4V|1|FB|G|1687
6B4V|1|FB|U|1688
6B4V|1|FB|A|1689
6B4V|1|FB|A|1690
6B4V|1|FB|C|1691
*
6B4V|1|FB|G|1696
6B4V|1|FB|G|1697
6B4V|1|FB|A|1698
6B4V|1|FB|G|1699
6B4V|1|FB|A|1700
6B4V|1|FB|A|1701
6B4V|1|FB|G|1702

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain EB

Small subunit ribosomal RNA; SSU rRNA

Chain IB

50S ribosomal protein L2