IL_6B4V_303

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_303 not in the Motif Atlas

Geometric match to IL_3NDB_001

Geometric discrepancy: 0.3486

The information below is about IL_3NDB_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6B4V|1|FB|C|2107
6B4V|1|FB|C|2108
6B4V|1|FB|U|2109
6B4V|1|FB|G|2110
*
6B4V|1|FB|C|2179
6B4V|1|FB|U|2180
6B4V|1|FB|G|2181
6B4V|1|FB|G|2182

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain HB

Transfer RNA; tRNA