IL_6B4V_308

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_308 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.079

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

6B4V|1|FB|C|2350
6B4V|1|FB|G|2351
6B4V|1|FB|A|2352
6B4V|1|FB|G|2353
*
6B4V|1|FB|C|2364
6B4V|1|FB|G|2365
6B4V|1|FB|A|2366
6B4V|1|FB|G|2367

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L27

Chain JC

50S ribosomal protein L35