IL_6B4V_320

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6B4V|1|FB|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_320 not in the Motif Atlas

Geometric match to IL_4V9F_090

Geometric discrepancy: 0.2018

The information below is about IL_4V9F_090

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_73464.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6B4V|1|FB|C|2591
6B4V|1|FB|G|2592
*
6B4V|1|FB|C|2601
6B4V|1|FB|A|2602
6B4V|1|FB|G|2603

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain IB

50S ribosomal protein L2

Chain MC

Transfer RNA; tRNA

Chain NC

Peptide chain release factor 1