IL_6B4V_326

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

6B4V|1|FB|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_326 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0788

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6B4V|1|FB|G|2737
6B4V|1|FB|A|2738
6B4V|1|FB|U|2739
6B4V|1|FB|A|2740
6B4V|1|FB|A|2741
6B4V|1|FB|C|2742
*
6B4V|1|FB|G|2762
6B4V|1|FB|G|2763
6B4V|1|FB|A|2764
6B4V|1|FB|A|2765
6B4V|1|FB|G|2766
6B4V|1|FB|C|2767

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain KC

50S ribosomal protein L36

Chain MB

50S ribosomal protein L6

Chain OB

50S ribosomal protein L13