IL_6B4V_335

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUGGUAC*GGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_335 not in the Motif Atlas

Homologous match to IL_7RQB_115

Geometric discrepancy: 0.0919

The information below is about IL_7RQB_115

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.3

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6B4V|1|GB|C|71
6B4V|1|GB|G|72
6B4V|1|GB|A|73
6B4V|1|GB|U|74
6B4V|1|GB|G|75
6B4V|1|GB|G|76
6B4V|1|GB|U|77
6B4V|1|GB|A|78
6B4V|1|GB|C|79
*
6B4V|1|GB|G|97
6B4V|1|GB|G|98
6B4V|1|GB|A|99
6B4V|1|GB|G|100
6B4V|1|GB|A|101
6B4V|1|GB|G|102
6B4V|1|GB|U|103
6B4V|1|GB|A|104
6B4V|1|GB|G|105

Current chains

Chain GB

5S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L25

Chain FB

Large subunit ribosomal RNA; LSU rRNA

Chain RB

50S ribosomal protein L16