IL_6B4V_342

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAGGGAACCCGG*CUGGGGUGCCCCGCGAGGGGAGCCCUA

Length

39 nucleotides

Bulged bases

6B4V|1|A|A|1005, 6B4V|1|A|U|1025, 6B4V|1|A|C|1028|||C, 6B4V|1|A|G|1029, 6B4V|1|A|C|1030, 6B4V|1|A|G|1032|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|A|U|999
6B4V|1|A|A|1000
6B4V|1|A|G|1001
6B4V|1|A|G|1002
6B4V|1|A|G|1003
6B4V|1|A|A|1004
6B4V|1|A|A|1005
6B4V|1|A|C|1006
6B4V|1|A|C|1007
6B4V|1|A|C|1008
6B4V|1|A|G|1009
6B4V|1|A|G|1010
*
6B4V|1|A|C|1019
6B4V|1|A|U|1020
6B4V|1|A|G|1021
6B4V|1|A|G|1022
6B4V|1|A|G|1023
6B4V|1|A|G|1024
6B4V|1|A|U|1025
6B4V|1|A|G|1026
6B4V|1|A|C|1027
6B4V|1|A|C|1028|||A
6B4V|1|A|C|1028|||B
6B4V|1|A|C|1028|||C
6B4V|1|A|G|1029
6B4V|1|A|C|1030
6B4V|1|A|G|1031
6B4V|1|A|A|1032|||A
6B4V|1|A|G|1032|||B
6B4V|1|A|G|1032|||C
6B4V|1|A|G|1033
6B4V|1|A|G|1034
6B4V|1|A|A|1035
6B4V|1|A|G|1036
6B4V|1|A|C|1037
6B4V|1|A|C|1038
6B4V|1|A|C|1039
6B4V|1|A|U|1040
6B4V|1|A|A|1041

Current chains

Chain A

16S ribosomal RNA

Nearby chains