IL_6B4V_348
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- (5MC)AC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 6B4V|1|A|A|1492, 6B4V|1|A|A|1493
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6B4V_348 not in the Motif Atlas
- Geometric match to IL_2O3X_003
- Geometric discrepancy: 0.2063
- The information below is about IL_2O3X_003
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_61702.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
6B4V|1|A|5MC|1407
6B4V|1|A|A|1408
6B4V|1|A|C|1409
*
6B4V|1|A|G|1491
6B4V|1|A|A|1492
6B4V|1|A|A|1493
6B4V|1|A|G|1494
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain HA
- mRNA
- Chain JA
- Peptide chain release factor 1
- Chain UA
- 30S ribosomal protein S12
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