IL_6B4V_358
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CCGAGC*GCGGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6B4V_358 not in the Motif Atlas
- Geometric match to IL_8C3A_028
- Geometric discrepancy: 0.3429
- The information below is about IL_8C3A_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6B4V|1|B|C|2466
6B4V|1|B|C|2467
6B4V|1|B|G|2468
6B4V|1|B|A|2469
6B4V|1|B|G|2470
6B4V|1|B|C|2471
*
6B4V|1|B|G|2479
6B4V|1|B|C|2480
6B4V|1|B|G|2481
6B4V|1|B|G|2482
6B4V|1|B|C|2483
6B4V|1|B|G|2484
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain GA
- 50S ribosomal protein L36
- Chain JA
- Peptide chain release factor 1
- Chain N
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L25
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