IL_6B4V_365

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGG*CUU

Length

7 nucleotides

Bulged bases

6B4V|1|EB|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_365 not in the Motif Atlas

Geometric match to IL_7Y2B_003

Geometric discrepancy: 0.1802

The information below is about IL_7Y2B_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

6B4V|1|EB|G|925
6B4V|1|EB|G|926
6B4V|1|EB|G|927
6B4V|1|EB|G|928
*
6B4V|1|EB|C|1389
6B4V|1|EB|U|1390
6B4V|1|EB|U|1391

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain LC

mRNA