IL_6B4V_378

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCGAAGACAGCCAG*CUGGUCGAGUG

Length

26 nucleotides

Bulged bases

6B4V|1|FB|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|FB|C|1041
6B4V|1|FB|G|1042
6B4V|1|FB|C|1043
6B4V|1|FB|G|1044
6B4V|1|FB|A|1045
6B4V|1|FB|A|1046
6B4V|1|FB|G|1047
6B4V|1|FB|A|1048
6B4V|1|FB|C|1049
6B4V|1|FB|A|1050
6B4V|1|FB|G|1051
6B4V|1|FB|C|1052
6B4V|1|FB|C|1053
6B4V|1|FB|A|1054
6B4V|1|FB|G|1055
*
6B4V|1|FB|C|1104
6B4V|1|FB|U|1105
6B4V|1|FB|G|1106
6B4V|1|FB|G|1107
6B4V|1|FB|U|1108
6B4V|1|FB|C|1109
6B4V|1|FB|G|1110
6B4V|1|FB|A|1111
6B4V|1|FB|G|1112
6B4V|1|FB|U|1113
6B4V|1|FB|G|1114

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain KC

50S ribosomal protein L36

Chain MB

50S ribosomal protein L6