IL_6B4V_381

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGGGAGCC*GGCGCCGGUGAAAUACCA

Length

26 nucleotides

Bulged bases

6B4V|1|FB|G|2124, 6B4V|1|FB|C|2164, 6B4V|1|FB|G|2168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|FB|U|2122
6B4V|1|FB|G|2123
6B4V|1|FB|G|2124
6B4V|1|FB|G|2125
6B4V|1|FB|A|2126
6B4V|1|FB|G|2127
6B4V|1|FB|C|2128
6B4V|1|FB|C|2129
*
6B4V|1|FB|G|2159
6B4V|1|FB|G|2160
6B4V|1|FB|C|2161
6B4V|1|FB|G|2162
6B4V|1|FB|C|2163
6B4V|1|FB|C|2164
6B4V|1|FB|G|2165
6B4V|1|FB|G|2166
6B4V|1|FB|U|2167
6B4V|1|FB|G|2168
6B4V|1|FB|A|2169
6B4V|1|FB|A|2170
6B4V|1|FB|A|2171
6B4V|1|FB|U|2172
6B4V|1|FB|A|2173
6B4V|1|FB|C|2174
6B4V|1|FB|C|2175
6B4V|1|FB|A|2176

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain HB

Transfer RNA; tRNA