IL_6B4V_403

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

6B4V|1|EB|C|1260, 6B4V|1|EB|G|1274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_403 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.4129

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6B4V|1|EB|C|1259
6B4V|1|EB|C|1260
6B4V|1|EB|A|1261
6B4V|1|EB|C|1262
*
6B4V|1|EB|G|1273
6B4V|1|EB|G|1274
6B4V|1|EB|A|1275
6B4V|1|EB|G|1276

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain FD

30S ribosomal protein S19

Chain HD

30S ribosomal protein Thx