IL_6B4V_407
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6B4V_407 not in the Motif Atlas
- Homologous match to IL_9DFE_028
- Geometric discrepancy: 0.1308
- The information below is about IL_9DFE_028
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_16301.1
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
6B4V|1|FB|G|864
6B4V|1|FB|C|865
6B4V|1|FB|A|866
6B4V|1|FB|C|867
6B4V|1|FB|U|868
*
6B4V|1|FB|A|909
6B4V|1|FB|A|910
6B4V|1|FB|A|911
6B4V|1|FB|C|912
Current chains
- Chain FB
- 23S ribosomal RNA
Nearby chains
- Chain AC
- 50S ribosomal protein L25
- Chain GB
- 5S ribosomal RNA; 5S rRNA
- Chain RB
- 50S ribosomal protein L16
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