IL_6BJX_005

3D structure

PDB id

6BJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GUAC*GAC

Length

7 nucleotides

Bulged bases

6BJX|1|A|A|131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BJX_005 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.2653

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

6BJX|1|A|G|129
6BJX|1|A|U|130
6BJX|1|A|A|131
6BJX|1|A|C|132
*
6BJX|1|A|G|191
6BJX|1|A|A|192
6BJX|1|A|C|193

Current chains

Chain A

Group I self-splicing intron P4-P6 domain

Nearby chains

Chain B

Group I self-splicing intron P4-P6 domain