IL_6BJX_006

3D structure

PDB id

6BJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GUA*UAAUAAGC

Length

11 nucleotides

Bulged bases

6BJX|1|A|U|185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BJX_006 not in the Motif Atlas

Geometric match to IL_2R8S_005

Geometric discrepancy: 0.121

The information below is about IL_2R8S_005

Detailed Annotation

cWH basepair with bulged bases

Broad Annotation

cWH basepair with bulged bases

Motif group

IL_74957.1

Basepair signature

cWW-L-cHW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6BJX|1|A|G|134
6BJX|1|A|U|135
6BJX|1|A|A|136
*
6BJX|1|A|U|182
6BJX|1|A|A|183
6BJX|1|A|A|184
6BJX|1|A|U|185
6BJX|1|A|A|186
6BJX|1|A|A|187
6BJX|1|A|G|188
6BJX|1|A|C|189

Current chains

Chain A

Group I self-splicing intron P4-P6 domain

Nearby chains