IL_6BJX_012

3D structure

PDB id

6BJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CAACAGC*GACAUG

Length

13 nucleotides

Bulged bases

6BJX|1|B|A|125, 6BJX|1|B|U|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BJX_012 not in the Motif Atlas

Geometric match to IL_2R8S_003

Geometric discrepancy: 0.1502

The information below is about IL_2R8S_003

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_68405.1

Basepair signature

cWW-cSS-L-tWH-tHW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6BJX|1|B|C|121
6BJX|1|B|A|122
6BJX|1|B|A|123
6BJX|1|B|C|124
6BJX|1|B|A|125
6BJX|1|B|G|126
6BJX|1|B|C|127
*
6BJX|1|B|G|195
6BJX|1|B|A|196
6BJX|1|B|C|197
6BJX|1|B|A|198
6BJX|1|B|U|199
6BJX|1|B|G|200

Current chains

Chain B

Group I self-splicing intron P4-P6 domain

Nearby chains