IL_6BJX_018

3D structure

PDB id

6BJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CUAAG*UAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BJX_018 not in the Motif Atlas

Geometric match to IL_1GID_014

Geometric discrepancy: 0.0811

The information below is about IL_1GID_014

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_67767.3

Basepair signature

cWW-tWH-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

6BJX|1|B|C|223
6BJX|1|B|U|224
6BJX|1|B|A|225
6BJX|1|B|A|226
6BJX|1|B|G|227
*
6BJX|1|B|U|247
6BJX|1|B|A|248
6BJX|1|B|U|249
6BJX|1|B|G|250

Current chains

Chain B

Group I self-splicing intron P4-P6 domain

Nearby chains

Chain A

Group I self-splicing intron P4-P6 domain