3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GGG*UU
Length
5 nucleotides
Bulged bases
6BOH|1|A|G|926
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_036 not in the Motif Atlas
Homologous match to IL_4LFB_036
Geometric discrepancy: 0.1417
The information below is about IL_4LFB_036
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.13
Basepair signature
cWW-L-cWW
Number of instances in this motif group
49

Unit IDs

6BOH|1|A|G|925
6BOH|1|A|G|926
6BOH|1|A|G|927
*
6BOH|1|A|U|1390
6BOH|1|A|U|1391

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain HA
mRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3888 s