IL_6BOH_038
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BOH_038 not in the Motif Atlas
- Geometric match to IL_4V88_445
- Geometric discrepancy: 0.2044
- The information below is about IL_4V88_445
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_18604.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 46
Unit IDs
6BOH|1|A|G|953
6BOH|1|A|G|954
*
6BOH|1|A|C|1226
6BOH|1|A|A|1227
6BOH|1|A|C|1228
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain CB
- 30S ribosomal protein S19
- Chain IA
- Transfer RNA; tRNA
- Chain JA
- Peptide chain release factor 1
- Chain KA
- Peptide chain release factor 1
- Chain WA
- 30S ribosomal protein S13
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