3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
UAG*CG
Length
5 nucleotides
Bulged bases
6BOH|1|B|A|1490
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_115 not in the Motif Atlas
Homologous match to IL_7RQB_062
Geometric discrepancy: 0.1765
The information below is about IL_7RQB_062
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

6BOH|1|B|U|1489
6BOH|1|B|A|1490
6BOH|1|B|G|1491
*
6BOH|1|B|C|1499
6BOH|1|B|G|1500

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1831 s