IL_6BOH_152

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6BOH|1|B|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_152 not in the Motif Atlas

Geometric match to IL_4V9F_090

Geometric discrepancy: 0.241

The information below is about IL_4V9F_090

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_42771.1

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6BOH|1|B|C|2591
6BOH|1|B|G|2592
*
6BOH|1|B|C|2601
6BOH|1|B|A|2602
6BOH|1|B|G|2603

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain IA

Transfer RNA; tRNA