3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GAUAAC*GGAAGC
Length
12 nucleotides
Bulged bases
6BOH|1|B|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_158 not in the Motif Atlas
Homologous match to IL_7RQB_107
Geometric discrepancy: 0.0874
The information below is about IL_7RQB_107
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.5
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6BOH|1|B|G|2737
6BOH|1|B|A|2738
6BOH|1|B|U|2739
6BOH|1|B|A|2740
6BOH|1|B|A|2741
6BOH|1|B|C|2742
*
6BOH|1|B|G|2762
6BOH|1|B|G|2763
6BOH|1|B|A|2764
6BOH|1|B|A|2765
6BOH|1|B|G|2766
6BOH|1|B|C|2767

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain GA
50S ribosomal protein L36
Chain I
50S ribosomal protein L6
Chain K
50S ribosomal protein L13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1283 s