IL_6BOH_171

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUG*CG

Length

6 nucleotides

Bulged bases

6BOH|1|FB|G|64, 6BOH|1|FB|U|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_171 not in the Motif Atlas

Homologous match to IL_5J7L_005

Geometric discrepancy: 0.0964

The information below is about IL_5J7L_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6BOH|1|FB|C|63
6BOH|1|FB|G|64
6BOH|1|FB|U|65
6BOH|1|FB|G|66
*
6BOH|1|FB|C|103
6BOH|1|FB|G|104

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain ID

30S ribosomal protein S20