IL_6BOH_179

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_179 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1729

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6BOH|1|FB|G|292
6BOH|1|FB|G|293
*
6BOH|1|FB|U|304
6BOH|1|FB|G|305
6BOH|1|FB|G|306
6BOH|1|FB|C|307
6BOH|1|FB|C|308

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S12

Chain ED

30S ribosomal protein S16