IL_6BOH_190

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_190 not in the Motif Atlas

Homologous match to IL_4LFB_024

Geometric discrepancy: 0.1366

The information below is about IL_4LFB_024

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6BOH|1|FB|G|594
6BOH|1|FB|G|595
6BOH|1|FB|C|596
*
6BOH|1|FB|G|644
6BOH|1|FB|C|645

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain FD

30S ribosomal protein S17

Chain WC

30S ribosomal protein S8