IL_6BOH_191

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_191 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.1488

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

6BOH|1|FB|G|597
6BOH|1|FB|U|598
*
6BOH|1|FB|A|640
6BOH|1|FB|U|641
6BOH|1|FB|A|642
6BOH|1|FB|C|643

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain FD

30S ribosomal protein S17

Chain WC

30S ribosomal protein S8