IL_6BOH_204

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_204 not in the Motif Atlas

Geometric match to IL_4V88_445

Geometric discrepancy: 0.2052

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6BOH|1|FB|G|953
6BOH|1|FB|G|954
*
6BOH|1|FB|C|1226
6BOH|1|FB|A|1227
6BOH|1|FB|C|1228

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S13

Chain HD

30S ribosomal protein S19

Chain NC

Transfer RNA; tRNA

Chain OC

Peptide chain release factor 1

Chain PC

Peptide chain release factor 1