IL_6BOH_223

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_223 not in the Motif Atlas

Geometric match to IL_6CZR_171

Geometric discrepancy: 0.147

The information below is about IL_6CZR_171

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

6BOH|1|FB|G|1435
6BOH|1|FB|U|1436
6BOH|1|FB|C|1437
*
6BOH|1|FB|G|1464
6BOH|1|FB|C|1465
6BOH|1|FB|C|1466

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain GB

Large subunit ribosomal RNA; LSU rRNA

Chain ID

30S ribosomal protein S20

Chain VB

50S ribosomal protein L19