IL_6BOH_259

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6BOH|1|GB|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_259 not in the Motif Atlas

Homologous match to IL_7RQB_038

Geometric discrepancy: 0.1478

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

6BOH|1|GB|G|1011
6BOH|1|GB|U|1012
6BOH|1|GB|C|1013
*
6BOH|1|GB|G|1149
6BOH|1|GB|C|1150

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain PB

50S ribosomal protein L13

Chain WB

50S ribosomal protein L20