IL_6BOH_260

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

6BOH|1|GB|C|1142, 6BOH|1|GB|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_260 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1128

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6BOH|1|GB|C|1018
6BOH|1|GB|U|1019
6BOH|1|GB|A|1020
6BOH|1|GB|A|1021
6BOH|1|GB|G|1022
6BOH|1|GB|U|1023
6BOH|1|GB|G|1024
*
6BOH|1|GB|C|1140
6BOH|1|GB|U|1141
6BOH|1|GB|C|1142
6BOH|1|GB|A|1142|||B
6BOH|1|GB|A|1143
6BOH|1|GB|G|1144

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain LC

50S ribosomal protein L36

Chain PB

50S ribosomal protein L13