IL_6BOH_264

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6BOH|1|GB|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_264 not in the Motif Atlas

Homologous match to IL_7RQB_045

Geometric discrepancy: 0.0792

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6BOH|1|GB|C|1196
6BOH|1|GB|G|1197
6BOH|1|GB|U|1198
*
6BOH|1|GB|A|1247
6BOH|1|GB|G|1248
6BOH|1|GB|U|1249
6BOH|1|GB|G|1250

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain LB

50S ribosomal protein L4

Chain RB

50S ribosomal protein L15

Chain WB

50S ribosomal protein L20