IL_6BOH_286

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

6BOH|1|GB|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_286 not in the Motif Atlas

Geometric match to IL_7A0S_062

Geometric discrepancy: 0.1009

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6BOH|1|GB|A|1669
6BOH|1|GB|C|1670
6BOH|1|GB|U|1671
6BOH|1|GB|C|1672
6BOH|1|GB|U|1673
6BOH|1|GB|G|1674
*
6BOH|1|GB|C|1990
6BOH|1|GB|U|1991
6BOH|1|GB|G|1992
6BOH|1|GB|U|1993

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L3

Chain QB

50S ribosomal protein L14