IL_6BOH_289

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6BOH|1|GB|G|1801, 6BOH|1|GB|G|1816, 6BOH|1|GB|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_289 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0712

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6BOH|1|GB|U|1798
6BOH|1|GB|G|1799
6BOH|1|GB|C|1800
6BOH|1|GB|G|1801
6BOH|1|GB|A|1802
6BOH|1|GB|A|1803
6BOH|1|GB|C|1804
*
6BOH|1|GB|G|1813
6BOH|1|GB|G|1814
6BOH|1|GB|A|1815
6BOH|1|GB|G|1816
6BOH|1|GB|G|1817
6BOH|1|GB|U|1818
6BOH|1|GB|A|1819
6BOH|1|GB|U|1820
6BOH|1|GB|A|1821

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain FB

Small subunit ribosomal RNA; SSU rRNA

Chain JB

50S ribosomal protein L2