IL_6BOH_298

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

6BOH|1|GB|C|2055, 6BOH|1|GB|C|2612, 6BOH|1|GB|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_298 not in the Motif Atlas

Homologous match to IL_9DFE_079

Geometric discrepancy: 0.0824

The information below is about IL_9DFE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6BOH|1|GB|A|2054
6BOH|1|GB|C|2055
6BOH|1|GB|G|2056
6BOH|1|GB|A|2057
*
6BOH|1|GB|U|2611
6BOH|1|GB|C|2612
6BOH|1|GB|U|2613
6BOH|1|GB|A|2614
6BOH|1|GB|U|2615

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain HC

50S ribosomal protein L32

Chain KB

50S ribosomal protein L3

Chain YB

50S ribosomal protein L22