IL_6BOH_311

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_311 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1193

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

6BOH|1|GB|A|2459
6BOH|1|GB|U|2460
6BOH|1|GB|C|2461
*
6BOH|1|GB|G|2489
6BOH|1|GB|G|2490
6BOH|1|GB|U|2491
6BOH|1|GB|U|2492
6BOH|1|GB|U|2493

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L27

Chain SB

50S ribosomal protein L16