3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GAA*U(PSU)C
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_317 not in the Motif Atlas
Homologous match to IL_7RQB_100
Geometric discrepancy: 0.0777
The information below is about IL_7RQB_100
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6BOH|1|GB|G|2588
6BOH|1|GB|A|2589
6BOH|1|GB|A|2590
*
6BOH|1|GB|U|2604
6BOH|1|GB|PSU|2605
6BOH|1|GB|C|2606

Current chains

Chain GB
23S ribosomal RNA

Nearby chains

Chain JB
50S ribosomal protein L2
Chain NC
Transfer RNA; tRNA

Coloring options:


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