IL_6BOH_317

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAA*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_317 not in the Motif Atlas

Homologous match to IL_7RQB_100

Geometric discrepancy: 0.0777

The information below is about IL_7RQB_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BOH|1|GB|G|2588
6BOH|1|GB|A|2589
6BOH|1|GB|A|2590
*
6BOH|1|GB|U|2604
6BOH|1|GB|PSU|2605
6BOH|1|GB|C|2606

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L2

Chain NC

Transfer RNA; tRNA