IL_6BOH_326

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGG*CCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_326 not in the Motif Atlas

Homologous match to IL_7RQB_109

Geometric discrepancy: 0.0942

The information below is about IL_7RQB_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58764.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

6BOH|1|GB|G|2843
6BOH|1|GB|G|2844
6BOH|1|GB|G|2845
6BOH|1|GB|G|2846
*
6BOH|1|GB|C|2870
6BOH|1|GB|C|2871
6BOH|1|GB|G|2872
6BOH|1|GB|A|2873
6BOH|1|GB|C|2874

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L3

Chain TB

50S ribosomal protein L17

Chain VB

50S ribosomal protein L19