IL_6BOH_335

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGCCAACU*AGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BOH|1|A|C|504
6BOH|1|A|G|505
6BOH|1|A|G|506
6BOH|1|A|C|507
6BOH|1|A|C|508
6BOH|1|A|A|509
6BOH|1|A|A|510
6BOH|1|A|C|511
6BOH|1|A|U|512
*
6BOH|1|A|A|539
6BOH|1|A|G|540
6BOH|1|A|G|541

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain MA

30S ribosomal protein S3

Chain NA

50S ribosomal protein S4

Chain OA

30S ribosomal protein S5

Chain VA

30S ribosomal protein S12