3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCCGCGAGGGGAGCCCUAGCACAG*CUUACG
Length
69 nucleotides
Bulged bases
6BOH|1|A|G|1002, 6BOH|1|A|G|1024, 6BOH|1|A|U|1025, 6BOH|1|A|C|1028|||B, 6BOH|1|A|C|1028|||C, 6BOH|1|A|C|1030, 6BOH|1|A|G|1032|||C, 6BOH|1|A|U|1212, 6BOH|1|A|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6BOH|1|A|C|990
6BOH|1|A|U|991
6BOH|1|A|U|992
6BOH|1|A|G|993
6BOH|1|A|A|994
6BOH|1|A|C|995
6BOH|1|A|A|996
6BOH|1|A|U|997
6BOH|1|A|G|998|||A
6BOH|1|A|C|998|||B
6BOH|1|A|U|999
6BOH|1|A|A|1000
6BOH|1|A|G|1001
6BOH|1|A|G|1002
6BOH|1|A|G|1003
6BOH|1|A|A|1004
6BOH|1|A|A|1005
6BOH|1|A|C|1006
6BOH|1|A|C|1007
6BOH|1|A|C|1008
6BOH|1|A|G|1009
6BOH|1|A|G|1010
6BOH|1|A|G|1011
6BOH|1|A|U|1012
6BOH|1|A|G|1013
6BOH|1|A|A|1014
6BOH|1|A|A|1015
6BOH|1|A|A|1016
6BOH|1|A|G|1017
6BOH|1|A|C|1018
6BOH|1|A|C|1019
6BOH|1|A|U|1020
6BOH|1|A|G|1021
6BOH|1|A|G|1022
6BOH|1|A|G|1023
6BOH|1|A|G|1024
6BOH|1|A|U|1025
6BOH|1|A|G|1026
6BOH|1|A|C|1027
6BOH|1|A|C|1028|||A
6BOH|1|A|C|1028|||B
6BOH|1|A|C|1028|||C
6BOH|1|A|G|1029
6BOH|1|A|C|1030
6BOH|1|A|G|1031
6BOH|1|A|A|1032|||A
6BOH|1|A|G|1032|||B
6BOH|1|A|G|1032|||C
6BOH|1|A|G|1033
6BOH|1|A|G|1034
6BOH|1|A|A|1035
6BOH|1|A|G|1036
6BOH|1|A|C|1037
6BOH|1|A|C|1038
6BOH|1|A|C|1039
6BOH|1|A|U|1040
6BOH|1|A|A|1041
6BOH|1|A|G|1042
6BOH|1|A|C|1043
6BOH|1|A|A|1044
6BOH|1|A|C|1045
6BOH|1|A|A|1046
6BOH|1|A|G|1047
*
6BOH|1|A|C|1210
6BOH|1|A|U|1211
6BOH|1|A|U|1212
6BOH|1|A|A|1213
6BOH|1|A|C|1214
6BOH|1|A|G|1215

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain CB
30S ribosomal protein S19
Chain KA
Peptide chain release factor 1
Chain XA
30S ribosomal protein S14 type Z

Coloring options:

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