IL_6BOH_368

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_368 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1857

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6BOH|1|FB|C|1158
6BOH|1|FB|U|1159
6BOH|1|FB|G|1160
6BOH|1|FB|C|1161
*
6BOH|1|FB|G|1175
6BOH|1|FB|A|1176
6BOH|1|FB|G|1177
6BOH|1|FB|G|1178
6BOH|1|FB|A|1179
6BOH|1|FB|A|1180
6BOH|1|FB|G|1181

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain QC

30S ribosomal protein S2

Chain XC

30S ribosomal protein S9