3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_368 not in the Motif Atlas
Geometric match to IL_5J7L_053
Geometric discrepancy: 0.1857
The information below is about IL_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6BOH|1|FB|C|1158
6BOH|1|FB|U|1159
6BOH|1|FB|G|1160
6BOH|1|FB|C|1161
*
6BOH|1|FB|G|1175
6BOH|1|FB|A|1176
6BOH|1|FB|G|1177
6BOH|1|FB|G|1178
6BOH|1|FB|A|1179
6BOH|1|FB|A|1180
6BOH|1|FB|G|1181

Current chains

Chain FB
16S ribosomal RNA

Nearby chains

Chain QC
30S ribosomal protein S2
Chain XC
30S ribosomal protein S9

Coloring options:


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