IL_6BOH_374

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCUAGG*CCAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_374 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.3809

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6BOH|1|GB|G|875
6BOH|1|GB|C|876
6BOH|1|GB|U|877
6BOH|1|GB|A|878
6BOH|1|GB|G|879
6BOH|1|GB|G|880
*
6BOH|1|GB|C|897
6BOH|1|GB|C|898
6BOH|1|GB|A|899
6BOH|1|GB|A|900
6BOH|1|GB|A|901
6BOH|1|GB|C|902

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L25

Chain SB

50S ribosomal protein L16