IL_6BOK_011
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 6BOK|1|A|U|244, 6BOK|1|A|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BOK_011 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0783
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6BOK|1|A|C|242
6BOK|1|A|A|243
6BOK|1|A|U|244
6BOK|1|A|C|245
6BOK|1|A|A|246
6BOK|1|A|G|247
*
6BOK|1|A|C|277
6BOK|1|A|G|278
6BOK|1|A|A|279
6BOK|1|A|C|280
6BOK|1|A|G|281
6BOK|1|A|A|282
6BOK|1|A|C|283
6BOK|1|A|G|284
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain TA
- 30S ribosomal protein S12
- Chain YA
- 30S ribosomal protein S17
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