IL_6BOK_022

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6BOK|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_022 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1085

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6BOK|1|A|C|569
6BOK|1|A|G|570
6BOK|1|A|U|571
6BOK|1|A|A|572
6BOK|1|A|A|573
6BOK|1|A|A|574
6BOK|1|A|G|575
*
6BOK|1|A|C|880
6BOK|1|A|G|881

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain TA

30S ribosomal protein S12

Chain YA

30S ribosomal protein S17