IL_6BOK_036
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 6BOK|1|A|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BOK_036 not in the Motif Atlas
- Homologous match to IL_4LFB_037
- Geometric discrepancy: 0.1312
- The information below is about IL_4LFB_037
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_61370.1
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
6BOK|1|A|G|933
6BOK|1|A|C|934
6BOK|1|A|A|935
*
6BOK|1|A|U|1380
6BOK|1|A|U|1381
6BOK|1|A|C|1382
6BOK|1|A|C|1383
6BOK|1|A|C|1384
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- Small subunit ribosomal RNA fragment; SSU rRNA fragment
- Chain HA
- mRNA
- Chain IA
- Small subunit ribosomal RNA fragment; SSU rRNA fragment
- Chain OA
- 30S ribosomal protein S7
- Chain QA
- 30S ribosomal protein S9
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